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Describes important modelling and computational methods for systems biology research to enable practitioners to select and use the most suitable technique Systems Biology Modelling and Analysis provides an overview of state-of-the-art techniques and introduces related tools and practices to formalize models and automate reasoning for systems biology. The authors present and compare the main formal methods used in systems biology for modelling biological networks, including discussion of their advantages, drawbacks, and main applications. Each chapter includes an intuitive presentation of the specific formalism, a brief history of the formalism and of its applications in systems biology, a fo...
An up-to-date and comprehensive account of set-oriented symbolic manipulation and automated reasoning methods. This book is of interest to graduates and researchers in theoretical computer science and computational logic and automated reasoning.
This book constitutes the refereed proceedings of the 12th International Conference on Logic for Programming, Artificial Intelligence, and Reasoning, LPAR 2005, held in Montego Bay, Jamaica in December 2005. The 46 revised full papers presented together with abstracts of 3 invited talks were carefully reviewed and selected from 108 full paper submissions. The papers address all current issues in logic programming, logic-based program manipulation, formal method, automated reasoning, and various kinds of AI logics.
This book constitutes the refereed proceedings of the Third International Workshop on Frontiers of Combining Systems, FroCoS 2000, held in Nancy, France, in March 2000. The 14 revised full papers presented together with four invited papers were carefully reviewed and selected from a total of 31 submissions. Among the topics covered are constraint processing, interval narrowing, rewriting systems, proof planning, sequent calculus, type systems, model checking, theorem proving, declarative programming, logic programming, and equational theories.
This book contains the revised papers presented at the Amsterdam Colloquium 2009, held in Amsterdam, The Netherlands, in December 2009. The 41 thoroughly refereed and revised contributions presented together with the revised abstracts of 5 invited talks are organized in five sections: the first section contains extended abstracts of the talks given by the invited speakers; the second, third and fourth sections contain invited and submitted contributions to the three thematic workshops hosted by the colloquium: the Workshop on Implicature and Grammar, the Workshop on Natural Logic, and the Workshop on Vagueness; the final section consists of submissions to the general program. The topics covered range from descriptive (syntactic and semantic analyses of all kinds of expressions) to theoretical (logical and computational properties of semantic theories, philosophical foundations, evolution and learning of language).
Edited in collaboration with FoLLI, the Association of Logic, Language and Information, this book inaugurates the new FoLLI LNAI subline. It constitutes the refereed proceedings of the 5th International Conference on Logical Aspects of Computational Linguistics, LACL 2005, held in Bordeaux, France in April 2005. The 25 revised full papers presented were carefully reviewed and selected from over 40 submissions. The papers address a wide range of logical and formal methods in computational linguistics with studies of particular grammar formalisms and their computational properties, language engineering, and traditional topics about the syntax/semantics interface.
The present book is a festschrift in honor of Luigia Carlucci Aiello. The 18 articles included are written by former students, friends, and international colleagues, who have cooperated with Luigia Carlucci Aiello, scientifically or in AI boards or committees. The contributions by reputed researchers span a wide range of AI topics and reflect the breadth and depth of Aiello's own work.
The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems-oriented point of view of biological phenomena. This, the third Transactions on Computational Systems Biology volume, edited by Emanuela Merelli, Pedro Pablo Gonzalez and Andrea Omicini, is devoted to considerably extended versions of selected papers presented at the International Workshop on Network Tools and Applications in Biology (NETTAB 2004), held at the University of Camerino, in Camerino, Italy, in September 2004. Dedicated especially to models and metaphors from biology to bioinformatics tools, the 10 papers selected for the special issue cover a wide range of bioinformatics research such as data visualisation, protein/RNA structure prediction, motif finding, modelling and simulation of protein interaction, genetic linkage analysis, and notations and models for systems biology.
This book constitutes the refereed proceedings of the 5th International Workshop on Hybrid Systems Biology, HSB 2016, held in Grenoble, France, in October 2016. The 11 full papers presented in this book were carefully reviewed and selected from 26 submissions. They were organized and presented in 4 thematic sessions also reflected in this book: model simulation; model analysis; discrete and network modelling; stochastic modelling for biological systems.