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Computational and Statistical Epigenomics
This book introduces the reader to modern computational and statistical tools for translational epigenomics research. Over the last decade, epigenomics has emerged as a key area of molecular biology, epidemiology and genome medicine. Epigenomics not only offers us a deeper understanding of fundamental cellular biology, but also provides us with the basis for an improved understanding and management of complex diseases. From novel biomarkers for risk prediction, early detection, diagnosis and prognosis of common diseases, to novel therapeutic strategies, epigenomics is set to play a key role in the personalized medicine of the future. In this book we introduce the reader to some of the most i...
Rethinking Cancer
Leading scientists argue for a new paradigm for cancer research, proposing a complex systems view of cancer supported by empirical evidence. Current consensus in cancer research explains cancer as a disease caused by specific mutations in certain genes. After dramatic advances in genome sequencing, never before have we known so much about the individual cancer cell--and yet never before has it been so unclear what to do with this knowledge. In this volume, leading researchers argue for a new theory framework for understanding and treating cancer. The contributors propose a complex systems view of cancer, presenting conceptual building blocks for a new research paradigm supported by empirical...
Bioinformatics for Diagnosis, Prognosis and Treatment of Complex Diseases
The book introduces the bioinformatics tools, databases and strategies for the translational research, focuses on the biomarker discovery based on integrative data analysis and systems biological network reconstruction. With the coming of personal genomics era, the biomedical data will be accumulated fast and then it will become reality for the personalized and accurate diagnosis, prognosis and treatment of complex diseases. The book covers both state of the art of bioinformatics methodologies and the examples for the identification of simple or network biomarkers. In addition, bioinformatics software tools and scripts are provided to the practical application in the study of complex diseases. The present state, the future challenges and perspectives were discussed. The book is written for biologists, biomedical informatics scientists and clinicians, etc. Dr. Bairong Shen is Professor and Director of Center for Systems Biology, Soochow University; he is also Director of Taicang Center for Translational Bioinformatics.
Statistical Genomics
This volume provides a collection of protocols from researchers in the statistical genomics field. Chapters focus on integrating genomics with other “omics” data, such as transcriptomics, epigenomics, proteomics, metabolomics, and metagenomics. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and thorough, Statistical Genomics hopes that by covering these diverse and timely topics researchers are provided insights into future directions and priorities of pan-omics and the precision medicine era.
Blind Source Separation
Blind Source Separation intends to report the new results of the efforts on the study of Blind Source Separation (BSS). The book collects novel research ideas and some training in BSS, independent component analysis (ICA), artificial intelligence and signal processing applications. Furthermore, the research results previously scattered in many journals and conferences worldwide are methodically edited and presented in a unified form. The book is likely to be of interest to university researchers, R&D engineers and graduate students in computer science and electronics who wish to learn the core principles, methods, algorithms and applications of BSS. Dr. Ganesh R. Naik works at University of Technology, Sydney, Australia; Dr. Wenwu Wang works at University of Surrey, UK.
Principal Manifolds for Data Visualization and Dimension Reduction
The book starts with the quote of the classical Pearson definition of PCA and includes reviews of various methods: NLPCA, ICA, MDS, embedding and clustering algorithms, principal manifolds and SOM. New approaches to NLPCA, principal manifolds, branching principal components and topology preserving mappings are described. Presentation of algorithms is supplemented by case studies. The volume ends with a tutorial PCA deciphers genome.
The Nature of Life and Its Potential to Survive
This book looks at the persistence of life and how difficult it would be to annihilate life, especially a species as successful as humanity. The idea that life in general is fragile is challenged by the hardiness of microbes, which shows that astrobiology on exoplanets and other satellites must be robust and plentiful. Microbes have adapted to virtually every niche on the planet, from the deep, hot biosphere, to the frigid heights of the upper troposphere. Life, it seems, is almost indestructible. The chapters in this work examine the various scenarios that might lead to the extermination of life, and why they will almost always fail. Life's highly adaptive nature ensures that it will cling on no matter how difficult the circumstances. Scientists are increasingly probing and questioning life's true limits in, on and above the Earth, and how these limits could be pushed elsewhere in the universe. This investigation puts life in its true astronomical context, with the reader taken on a journey to illustrate life's potential and perseverance.
Application of Clinical Bioinformatics
This book elucidates how genetic, biological and medical information can be applied to the development of personalized healthcare, medication and therapies. Focusing on aspects of the development of evidence-based approaches in bioinformatics and computational medicine, including data integration, methodologies, tools and models for clinical and translational medicine, it offers an essential introduction to clinical bioinformatics for clinical researchers and physicians, medical students and teachers, and scientists working with human disease-based omics and bioinformatics. Dr. Xiangdong Wang is a distinguished Professor of Medicine. He is Director of Shanghai Institute of Clinical Bioinform...
Epigenetic Epidemiology
Now in its second edition, this book provides a state of the art overview on basic concepts of epigenetic epidemiology and a comprehensive review of the rapidly evolving field of human epigenetics. Epigenetics plays an important role in shaping who we are and contributes to our prospects of health and disease. Unlike our genetic inheritance, our epigenome is malleable throughout the lifecourse and is shaped by our environmental experiences. Population-based epidemiologic studies increasingly incorporate epigenetic components. These so called epigenome-wide association studies (EWAS) contribute substantially to our understanding of the relevance of epigenetic marks, such as DNA methylation, h...
