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Polygons, Polyominoes and Polycubes
The problem of counting the number of self-avoiding polygons on a square grid, - therbytheirperimeterortheirenclosedarea,is aproblemthatis soeasytostate that, at ?rst sight, it seems surprising that it hasn’t been solved. It is however perhaps the simplest member of a large class of such problems that have resisted all attempts at their exact solution. These are all problems that are easy to state and look as if they should be solvable. They include percolation, in its various forms, the Ising model of ferromagnetism, polyomino enumeration, Potts models and many others. These models are of intrinsic interest to mathematicians and mathematical physicists, but can also be applied to many oth...
Algorithmic Probability and Combinatorics
This volume contains the proceedings of the AMS Special Sessions on Algorithmic Probability and Combinatories held at DePaul University on October 5-6, 2007 and at the University of British Columbia on October 4-5, 2008. This volume collects cutting-edge research and expository on algorithmic probability and combinatories. It includes contributions by well-established experts and younger researchers who use generating functions, algebraic and probabilistic methods as well as asymptotic analysis on a daily basis. Walks in the quarter-plane and random walks (quantum, rotor and self-avoiding), permutation tableaux, and random permutations are considered. In addition, articles in the volume pres...
Mathematical Approaches to Biomolecular Structure and Dynamics
This IMA Volume in Mathematics and its Applications MATHEMATICAL APPROACHES TO BIOMOLECULAR STRUCTURE AND DYNAMICS is one of the two volumes based on the proceedings of the 1994 IMA Sum mer Program on "Molecular Biology" and comprises Weeks 3 and 4 of the four-week program. Weeks 1 and 2 appeared as Volume 81: Genetic Mapping and DNA Sequencing. We thank Jill P. Mesirov, Klaus Schulten, and De Witt Sumners for organizing Weeks 3 and 4 of the workshop and for editing the proceedings. We also take this opportunity to thank the National Institutes of Health (NIH) (National Center for Human Genome Research), the National Science Foundation (NSF) (Biological Instrumen tation and Resources), and t...
Ideal Knots
In this book, experts in different fields of mathematics, physics, chemistry and biology present unique forms of knots which satisfy certain preassigned criteria relevant to a given field. They discuss the shapes of knotted magnetic flux lines, the forms of knotted arrangements of bistable chemical systems, the trajectories of knotted solitons, and the shapes of knots which can be tied using the shortest piece of elastic rope with a constant diameter.
New Scientific Applications of Geometry and Topology
Geometry and topology are subjects generally considered to be "pure" mathematics. Recently, however, some of the methods and results in these two areas have found new utility in both wet-lab science (biology and chemistry) and theoretical physics. Conversely, science is influencing mathematics, from posing questions that call for the construction of mathematical models to exporting theoretical methods of attack on long-standing problems of mathematical interest. Based on an AMS Short Course held in January 1992, this book contains six introductory articles on these intriguing new connections. There are articles by a chemist and a biologist about mathematics, and four articles by mathematicians writing about science and mathematics involved. Because this book communicates the excitement and utility of mathematics research at an elementary level, it is an excellent textbook in an advanced undergraduate mathematics course.
Physical and Numerical Models in Knot Theory
The physical properties of knotted and linked configurations in space have long been of interest to mathematicians. More recently, these properties have become significant to biologists, physicists, and engineers among others. Their depth of importance and breadth of application are now widely appreciated and valuable progress continues to be made each year. This volume presents several contributions from researchers using computers to study problems that would otherwise be intractable. While computations have long been used to analyze problems, formulate conjectures, and search for special structures in knot theory, increased computational power has made them a staple in many facets of the ...
Numerical Methods for Polymeric Systems
Polymers occur in many different states and their physical properties are strongly correlated with their conformations. The theoretical investigation of the conformational properties of polymers is a difficult task and numerical methods play an important role in this field. This book contains contributions from a workshop on numerical methods for polymeric systems, held at the IMA in May 1996, which brought together chemists, physicists, mathematicians, computer scientists and statisticians with a common interest in numerical methods. The two major approaches used in the field are molecular dynamics and Monte Carlo methods, and the book includes reviews of both approaches as well as applicat...
Lattice Models of Polymers
This book provides an introduction to lattice models of polymers. This is an important topic both in the theory of critical phenomena and the modelling of polymers. The first two chapters introduce the basic theory of random, directed and self-avoiding walks. The next two chapters develop and expand this theory to explore the self-avoiding walk in both two and three dimensions. Following chapters describe polymers near a surface, dense polymers, self-interacting polymers and branched polymers. The book closes with discussions of some geometrical and topological properties of polymers, and of self-avoiding surfaces on a lattice. The volume combines results from rigorous analytical and numerical work to give a coherent picture of the properties of lattice models of polymers. This book will be valuable for graduate students and researchers working in statistical mechanics, theoretical physics and polymer physics. It will also be of interest to those working in applied mathematics and theoretical chemistry.
Random Knotting and Linking
This volume includes both asymptotic results on the inevitability of random knotting and linking, and Monte Carlo simulations of knot probability at small lengths. The statistical mechanics and topology of surfaces on the d-dimensional simple cubic lattice are investigated. The energy of knots is studied both analytically and numerically. Vassiliev invariants are investigated and used in random knot simulations. A mutation scheme which leaves the Jones polynomial unaltered is described. Applications include the investigation of RNA secondary structure using Vassiliev invariants, and the direct experimental measurement of DNA knot probability as a function of salt concentration in random cyclization experiments on linear DNA molecules. The papers in this volume reflect the diversity of interest across science and mathematics in this subject, from topology and statistical mechanics to theoretical chemistry and wet-lab molecular biology.
Topology and Geometry in Polymer Science
This IMA Volume in Mathematics and its Applications TOPOLOGY AND GEOMETRY IN POLYMER SCIENCE is based on the proceedings of a very successful one-week workshop with the same title. This workshop was an integral part of the 1995-1996 IMA program on "Mathematical Methods in Materials Science." We would like to thank Stuart G. Whittington, De Witt Sumners, and Timothy Lodge for their excellent work as organizers of the meeting and for editing the proceedings. We also take this opportunity to thank the National Science Foun dation (NSF), the Army Research Office (ARO) and the Office of Naval Research (ONR), whose financial support made the workshop possible. A vner Friedman Robert Gulliver v PREFACE This book is the product of a workshop on Topology and Geometry of Polymers, held at the IMA in June 1996. The workshop brought together topologists, combinatorialists, theoretical physicists and polymer scientists, who share an interest in characterizing and predicting the microscopic en tanglement properties of polymers, and their effect on macroscopic physical properties.
