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Computation, Cooperation, and Life
Gheorghe Păun has played an important role within a wide range of disciplines, from the foundations of traditional computation theory and formal language theory to research gaining its inspiration from living nature. He has significantly contributed to the development of these diverse fields, initiating and pioneering some of them with remarkable imaginativeness and enthusiasm. Gheorghe Păun’s research focusses on systems inspired by structures and processes found in living systems, with the field of membrane computing or P systems being the most important of his initiatives. This Festschrift volume, published to honor Gheorghe Păun on the occasion of his 60th birthday, includes 16 cont...
Where Mathematics, Computer Science, Linguistics and Biology Meet
In the last years, it was observed an increasing interest of computer scientists in the structure of biological molecules and the way how they can be manipulated in vitro in order to define theoretical models of computation based on genetic engineering tools. Along the same lines, a parallel interest is growing regarding the process of evolution of living organisms. Much of the current data for genomes are expressed in the form of maps which are now becoming available and permit the study of the evolution of organisms at the scale of genome for the first time. On the other hand, there is an active trend nowadays throughout the field of computational biology toward abstracted, hierarchical views of biological sequences, which is very much in the spirit of computational linguistics. In the last decades, results and methods in the field of formal language theory that might be applied to the description of biological sequences were pointed out.
Unconventional Models of Computation, UMC’2K
This book contains papers presented at the 2nd International Conference on Unconventional Models of Computation (UMCK'2K), which was held at Solvay Institutes, Brussels, Belgium, in December 2000. Computers as we know them may be getting better and cheaper, and doing more for us, but they are still unable to cope with many tasks of practical interest. Nature, though, has been 'computing' with molecules and cells for billions of years, and these natural processes form the main motivation for the construction of radically new models of computation, the core theme of the papers in this volume. Unconventional Models of Computation, UMCK'2K covers all major areas of unconventional computation, including quantum computing, DNA-based computation, membrane computing and evolutionary algorithms.
DNA Based Computers III
This volume presents the proceedings from the third DIMACS workshop on "DNA Based Computers" held at the University of Pennsylvania (Philadelphia). The workshop was part of the Special Year on Molecular Biology and the Special Year on DNA Computing. The focus of this workshop was on the multidisciplinary nature of the conference, with emphasis on the interaction between biology and biochemistry on one hand and computer science and mathematics on the other.
Natural Computing for Simulation and Knowledge Discovery
Nature has long provided the inspiration for a variety of scientific discoveries in engineering, biomedicine, and computing, though only recently have these elements of nature been used directly in computational systems. Natural Computing for Simulation and Knowledge Discovery investigates the latest developments in nature-influenced technologies. Within its pages, readers will find an in-depth analysis of such advances as cryptographic solutions based on cell division, the creation and manipulation of biological computers, and particle swarm optimization techniques. Scientists, practitioners, and students in fields such as computing, mathematics, and molecular science will make use of this essential reference to explore current trends in natural computation and advance nature-inspired technologies to the next generation.
Arto Salomaa: Mathematician, Computer Scientist, and Teacher
This book outlines the scientific career of Arto Salomaa, a pioneer in theoretical computer science and mathematics. The author first interviewed the subject and his family and collaborators, and he then researched this fascinating biography of an intellectual who was key in the development of these fields. Early chapters progress chronologically from Academician Salomaa's origins, childhood, and education to his professional successes in science, teaching, and publishing. His most impactful direct research efforts have been in the areas of automata and formal languages. Beyond that he has influenced many more scientists and professionals through collaborations, teaching, and books on topics...
Algorithmic Bioprocesses
A fundamental understanding of algorithmic bioprocesses is key to learning how information processing occurs in nature at the cell level. The field is concerned with the interactions between computer science on the one hand and biology, chemistry, and DNA-oriented nanoscience on the other. In particular, this book offers a comprehensive overview of research into algorithmic self-assembly, RNA folding, the algorithmic foundations for biochemical reactions, and the algorithmic nature of developmental processes. The editors of the book invited 36 chapters, written by the leading researchers in this area, and their contributions include detailed tutorials on the main topics, surveys of the state...
Computing with Cells
Membrane systems are a new class of distributed and parallel model of computation inspired by the subdivision of living cells into compartments delimited by membranes. Their hierarchical internal structure, their locality of interactions, their inherent parallelism and also their capacity to create new compartments, represent the distinguishing hallmarks of membrane systems. Membrane computing, the study of membrane systems, is a fascinating and fast growing area of research. The main streams of current investigations in Membrane Computing concern theoretical computer science and the modelling of complex systems. In this monograph Pierluigi Frisco considers the former trend: he presents an i...
Fundamental Concepts in Computer Science
This book presents fundamental contributions to computer science as written and recounted by those who made the contributions themselves. As such, it is a highly original approach to a OC living historyOCO of the field of computer science. The scope of the book is broad in that it covers all aspects of computer science, going from the theory of computation, the theory of programming, and the theory of computer system performance, all the way to computer hardware and to major numerical applications of computers.
