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Quantitative Systems Biology for Engineering Organisms and Pathways
Studying organisms as a whole for potential metabolic(ally) engineering of organisms for production of (bio)chemicals is essential for industrial biotechnology. To this end, integrative analysis of different –omics measurements (transciptomics, proteomics, metabolomics, fluxomics) provides invaluable information. Combination of experimental top-down and bottom-up approaches with powerful analytical tools/techniques and mathematical modeling, namely (quantitative) systems biology, currently making the state of art of this discipline, is the only practice that would improve our understanding for the purpose. The use of high-throughput technologies induced the required development of many bio...
Thermophilic and Halophilic Extremophiles in Eurasian Environments
The eBook is the product of a partnership between the Norwegian Eurasia Program and the China Silk Road Program. At the present, our knowledge on microbiology and biogeochemistry from Eurasian (hyper)saline and thermal ecosystems is limited. Such information is essential to the field and contributes to a comprehensive understanding of microbial metabolic pathways and functions involved in biogeochemical processes in extreme ecosystems. This eBook includes a series of recent progress in microbial diversity, ecological functions, and biogeochemistry in Eurasian (hyper)saline and thermal ecosystems with the use of next generation sequencing, omics technologies and interdisciplinary collaboratio...
Biothermodynamics
This book covers the fundamentals of the rapidly growing field of biothermodynamics, showing how thermodynamics can best be applied to applications and processes in biochemical engineering. It describes the rigorous application of thermodynamics in biochemical engineering to rationalize bioprocess development and obviate a substantial fraction of t
Induced Resistance for Plant Defense
Induced resistance offers the prospect of broad spectrum, long-lasting and potentially environmentally-benign disease and pest control in plants. Induced Resistance for Plant Defense 2e provides a comprehensive account of the subject, encompassing the underlying science and methodology, as well as research on application of the phenomenon in practice. The second edition of this important book includes updated coverage of cellular aspects of induced resistance, including signalling and defenses, costs and trade-offs associated with the expression of induced resistance, research aimed at integrating induced resistance into crop protection practice, and induced resistance from a commercial pers...
Microbial Metabolomics
This detailed volume includes protocols that represent the breadth of microbial metabolomics approaches to both large-scale and small-scale experiments with intention of highlighting techniques that can be used for applications ranging from environmental microbiology to human disease. Utilizing mass spectrometry as their primary measurement tool, the chapters explore microbial metabolomics, metabolism and microbial physiology, metabolite sample preparation, current analytical techniques used to profile primary and secondary metabolites and lipids, as well as establishing data analysis workflows for targeted metabolomics, untargeted metabolomics, analysis of metabolic fluxes, and genome-scale...
Defensive Mutualism in Microbial Symbiosis
Anemones and fish, ants and acacia trees, fungus and trees, buffaloes and oxpeckers--each of these unlikely duos is an inimitable partnership in which the species' coexistence is mutually beneficial. More specifically, they represent examples of defensive mutualism, when one species receives protection against predators or parasites in exchange for
Unsupervised Feature Extraction Applied to Bioinformatics
This book proposes applications of tensor decomposition to unsupervised feature extraction and feature selection. The author posits that although supervised methods including deep learning have become popular, unsupervised methods have their own advantages. He argues that this is the case because unsupervised methods are easy to learn since tensor decomposition is a conventional linear methodology. This book starts from very basic linear algebra and reaches the cutting edge methodologies applied to difficult situations when there are many features (variables) while only small number of samples are available. The author includes advanced descriptions about tensor decomposition including Tucker decomposition using high order singular value decomposition as well as higher order orthogonal iteration, and train tenor decomposition. The author concludes by showing unsupervised methods and their application to a wide range of topics. Allows readers to analyze data sets with small samples and many features; Provides a fast algorithm, based upon linear algebra, to analyze big data; Includes several applications to multi-view data analyses, with a focus on bioinformatics.
Nano Devices and Sensors
The chapters in this edited book are written by some authors who have presented very high quality papers at the 2015 International Symposium of Next-Generation Electronics (ISNE 2015) held in Taipei, Taiwan. The ISNE 2015 was intended to provide a common forum for researchers, scientists, engineers, and practitioners throughout the world to present their latest research findings, ideas, developments, and applications in the general areas of electron devices, integrated circuits, and microelectronic systems and technologies. The scope of the conference includes the following topics: A. Green Electronics B. Microelectronic Circuits and Systems C. Integrated Circuits and Packaging Technologies ...
Drosophila Melanogaster Models of Motor Neuron Disease
Motor neuron diseases are the most catastrophic of neurodegenerative disorders. The cognitive function is spared, but the motor neuron degeneration translates into progressive muscle weakness and paralysis that propel the afflicted patient to eventual death. Neurodegenerative disorders constitute one of the major challenges of modern medicine in view of the current lack of effective therapies. The fruit fly, Drosophila melanogaster, has a distinguished history as an important model organism capable of shaping our fundamental understanding of life. Remarkably, the vast majority of all known human disease genes have a similar fly counterpart and at the molecular and physiological level, the ba...
