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Past and current research in computer performance analysis has focused primarily on dedicated parallel machines. However, future applications in the area of high-performance computing will not only use individual parallel systems but a large set of networked resources. This scenario of computational and data Grids is attracting a great deal of attention from both computer and computational scientists. In addition to the inherent complexity of parallel machines, the sharing and transparency of the available resources introduces new challenges on performance analysis, techniques, and systems. In order to meet those challenges, a multi-disciplinary approach to the multi-faceted problems of performance is required. New degrees of freedom will come into play with a direct impact on the performance of Grid computing, including wide-area network performance, quality-of-service (QoS), heterogeneity, and middleware systems, to mention only a few.
Performance Optimization of Numerically Intensive Codes offers a comprehensive, tutorial-style, hands-on, introductory and intermediate-level treatment of all the essential ingredients for achieving high performance in numerical computations on modern computers. The authors explain computer architectures, data traffic and issues related to performance of serial and parallel code optimization exemplified by actual programs written for algorithms of wide interest. The unique hands-on style is achieved by extensive case studies using realistic computational problems. The performance gain obtained by applying the techniques described in this book can be very significant. The book bridges the gap...
Advanced numerical simulations that use adaptive mesh refinement (AMR) methods have now become routine in engineering and science. Originally developed for computational fluid dynamics applications these methods have propagated to fields as diverse as astrophysics, climate modeling, combustion, biophysics and many others. The underlying physical models and equations used in these disciplines are rather different, yet algorithmic and implementation issues facing practitioners are often remarkably similar. Unfortunately, there has been little effort to review the advances and outstanding issues of adaptive mesh refinement methods across such a variety of fields. This book attempts to bridge this gap. The book presents a collection of papers by experts in the field of AMR who analyze past advances in the field and evaluate the current state of adaptive mesh refinement methods in scientific computing.
No single solution applied at one particular layer can help applications solve all performance-related issues with communication services. Instead, this book shows that a coordinated effort is needed among the layers. It covers many different types of technologies and layers across the stack, from the architectural features of the hardware, through the protocols and their implementation in operating system kernels, to the manner in which application services and middleware are using underlying platforms. The book also describes key developments in high-end platforms, high performance interconnection fabrics and communication libraries, and multi- and many-core systems.
The calculation of partial derivatives is a fundamental need in scientific computing. Automatic differentiation (AD) can be applied straightforwardly to obtain all necessary partial derivatives (usually first and, possibly, second derivatives) regardless of a code?s complexity. However, the space and time efficiency of AD can be dramatically improved?sometimes transforming a problem from intractable to highly feasible?if inherent problem structure is used to apply AD in a judicious manner. Automatic Differentiation in MATLAB using ADMAT with Applications discusses the efficient use of AD to solve real problems, especially multidimensional zero-finding and optimization, in the MATLAB environment. This book is concerned with the determination of the first and second derivatives in the context of solving scientific computing problems with an emphasis on optimization and solutions to nonlinear systems. The authors focus on the application rather than the implementation of AD, solve real nonlinear problems with high performance by exploiting the problem structure in the application of AD, and provide many easy to understand applications, examples, and MATLAB templates.
An introduction to graph algorithms accessible to those without a computer science background.
The Fifth International Conference on Computational Science (ICCS 2005) held in Atlanta, Georgia, USA, May 22-25, 2005 ...
This companion piece to the author’s 2018 book, A Software Repository for Orthogonal Polynomials, focuses on Gaussian quadrature and the related Christoffel function. The book makes Gauss quadrature rules of any order easily accessible for a large variety of weight functions and for arbitrary precision. It also documents and illustrates known as well as original approximations for Gauss quadrature weights and Christoffel functions. The repository contains 60+ datasets, each dealing with a particular weight function. Included are classical, quasi-classical, and, most of all, nonclassical weight functions and associated orthogonal polynomials. Scientists, engineers, applied mathematicians, and statisticians will find the book of interest.
Techniques for generating orthogonal polynomials numerically have appeared only recently, within the last 30 or so years. Orthogonal Polynomials in MATLAB: Exercises and Solutions describes these techniques and related applications, all supported by MATLAB programs, and presents them in a unique format of exercises and solutions designed by the author to stimulate participation. Important computational problems in the physical sciences are included as models for readers to solve their own problems.
Provides a rapid introduction to the world of vector and parallel processing for these linear algebra applications.