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Describes important modelling and computational methods for systems biology research to enable practitioners to select and use the most suitable technique Systems Biology Modelling and Analysis provides an overview of state-of-the-art techniques and introduces related tools and practices to formalize models and automate reasoning for systems biology. The authors present and compare the main formal methods used in systems biology for modelling biological networks, including discussion of their advantages, drawbacks, and main applications. Each chapter includes an intuitive presentation of the specific formalism, a brief history of the formalism and of its applications in systems biology, a fo...
This book constitutes the refereed proceedings of the 7th International Static Analysis Symposium, SAS 2000, held in Santa Barbara, CA, USA, in June/July 2000.The 20 revised full papers presented were carefully reviewed and selected from 52 submissions. Also included are 2 invited full papers. All current aspects of high-performance implementation and verification of programming languages are addressed, in particular object logics, model checking, constraint solving, abstract interpretation, program transformation, rewriting, confidentiality analysis, typed languages, unified analysis, code optimization, termination, code specialization, and guided abstraction.
This book constitutes the refereed proceedings of the 18th International Symposium on Static Analysis, SAS 2011, held in Venice, Italy, in September 2011. The 22 revised full papers were selected from 67 submissions. Also included in this volume are the abstracts of the invited talks that were given at the symposium by renowned experts in the field. The papers address all aspects of static analysis, including abstract domains, abstract interpretation, abstract testing, data flow analysis, bug detection, program transformation, program verification, security analysis and type checking.
This book constitutes the refereed proceedings of the 16th International Conference on Computational Methods in Systems Biology, CMSB 2018, held in BRNO, Czech Republic, in September 2018. The 15 full and 7 short papers presented together with 5 invited talks were carefully reviewed and selected from 46 submissions. Topics of interest include formalisms for modeling biological processes; models and their biological applications; frameworks for model verification, validation, analysis, and simulation of biological systems; high-performance computational systems biology; parameter and model inference from experimental data; automated parameter and model synthesis; model integration and biological databases; multi-scale modeling and analysis methods; design, analysis, and verification methods for synthetic biology; methods for biomolecular computing and engineered molecular devices. Chapters 3, 9 and 10 are available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.
This book constitutes the refereed proceedings of the 13th European Symposium on Programming, ESOP 2004, held in Barcelona, Spain, in March/April 2004. The 27 revised full papers presented together with the abstract of an invited talk were carefully reviewed and selected from a total of 118 submissions. The papers deal with a broad variety of current issues in the specification, analysis, and implementation of programming languages and systems.
This book constitutes the refereed proceedings of the 8th International Symposium on Static Analysis, SAS 2001, held in Paris, France, in July 2001. The 21 revised full papers presented together with 2 invited papers were carefully reviewed and selected from 62 submissions; also included are 5 abstracts of an invited session on security. The papers are organized in topical sections on program transformation, strictness and termination, semantics abstraction, logic and constraint programming, data structures, pointer analysis, model checking, and abstract model checking.
This book constitutes the refereed proceedings of the 30th International Symposium on Static Analysis, SAS 2023, held in Lisbon, Portugal, in October 2023. The 20 full papers included in this book were carefully reviewed and selected from 40 submissions. Static analysis is widely recognized as a fundamental tool for program verification, bug detection, compiler optimization, program understanding, and software maintenance. The papers deal with theoretical, practical and application advances in the area.
This volume contains the 28 papers presented at ESOP 2004, the 13th European Symposium on Programming, which took place in Barcelona, Spain, March 29– 31, 2004. The ESOP series began in 1986 with the goal of bridging the gap between theory and practice, and the conferences continue to be devoted to explaining fundamental issues in the speci?cation, analysis, and implementation of programming languages and systems. The volume begins with a summary of an invited contribution by Peter O’Hearn,titledResources,ConcurrencyandLocalReasoning,andcontinueswith the 27 papers selected by the Program Committee from 118 submissions. Each submission was reviewed by at least three referees, and papers were selected during a ten-day electronic discussion phase. I would like to sincerely thank the members of the Program Committee, as well as their subreferees, for their diligent work; Torben Amtoft, for helping me collect the papers for the proceedings; and Tiziana Margaria, Bernhard Ste?en, and their colleagues at MetaFrame, for the use of their conference management software.
This book constitutes the refereed proceedings of the 14th European Symposium on Programming, ESOP 2005, held in Edinburgh, UK in April 2005 as part of ETAPS. The 28 revised full papers presented with the extended abstract of an invited paper were carefully reviewed and selected from 14 submissions. The papers deal with a broad variety of current issues in the specification, analysis, and implementation of programming languages and systems.