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Proceedings of the 6th Asia-Pacific Bioinformatics Conference
High-throughput sequencing and functional genomics technologies have given us the human genome sequence as well as those of other experimentally, medically, and agriculturally important species, thus enabling large-scale genotyping and gene expression profiling of human populations. Databases containing large numbers of sequences, polymorphisms, structures, metabolic pathways, and gene expression profiles of normal and diseased tissues are rapidly being generated for human and model organisms. Bioinformatics is therefore gaining importance in the annotation of genomic sequences; the understanding of the interplay among and between genes and proteins; the analysis of the genetic variability o...
Similarity Joins in Relational Database Systems
State-of-the-art database systems manage and process a variety of complex objects, including strings and trees. For such objects equality comparisons are often not meaningful and must be replaced by similarity comparisons. This book describes the concepts and techniques to incorporate similarity into database systems. We start out by discussing the properties of strings and trees, and identify the edit distance as the de facto standard for comparing complex objects. Since the edit distance is computationally expensive, token-based distances have been introduced to speed up edit distance computations. The basic idea is to decompose complex objects into sets of tokens that can be compared effi...
Algorithms For Analysis, Inference, And Control Of Boolean Networks
The Boolean network (BN) is a mathematical model of genetic networks and other biological networks. Although extensive studies have been done on BNs from a viewpoint of complex systems, not so many studies have been undertaken from a computational viewpoint. This book presents rigorous algorithmic results on important computational problems on BNs, which include inference of a BN, detection of singleton and periodic attractors in a BN, and control of a BN. This book also presents algorithmic results on fundamental computational problems on probabilistic Boolean networks and a Boolean model of metabolic networks. Although most contents of the book are based on the work by the author and colla...
Discovery Science
This book constitutes the refereed proceedings of the 6th International Conference on Discovery Science, DS 2003, held in Sapporo, Japan in October 2003. The 18 revised full papers and 29 revised short papers presented together with 3 invited papers and abstracts of 2 invited talks were carefully reviewed and selected from 80 submissions. The papers address all current issues in discovery science including substructure discovery, Web navigation patterns discovery, graph-based induction, time series data analysis, rough sets, genetic algorithms, clustering, genome analysis, chaining patterns, association rule mining, classification, content based filtering, bioinformatics, case-based reasoning, text mining, Web data analysis, and more.
Computer and Information Sciences -- ISCIS 2006
This book constitutes the refereed proceedings of the 21st International Symposium on Computer and Information Sciences, ISCIS 2006, held in Istanbul, Turkey in October 2006. The 106 revised full papers presented together with five invited lectures were carefully reviewed and selected from 606 submissions.
Mathematical Foundations of Computer Science 2015
This two volume set LNCS 9234 and 9235 constitutes the refereed conference proceedings of the 40th International Symposium on Mathematical Foundations of Computer Science, MFCS 2015, held in Milan, Italy, in August 2015. The 82 revised full papers presented together with 5 invited talks were carefully selected from 201 submissions. The papers feature high-quality research in all branches of theoretical computer science. They have been organized in the following topical main sections: logic, semantics, automata, and theory of programming (volume 1) and algorithms, complexity, and games (volume 2).
Combinatorial Pattern Matching
This book constitutes the refereed proceedings of the 16th Annual Symposium on Combinatorial Pattern Matching, CPM 2005, held in Jeju island, Korea on June 19-22, 2005. The 37 revised full papers presented were carefully reviewed and selected from 129 submissions. They constitute original research contributions in combinatorial pattern matching and its applications. Among the application fields addressed are computational biology, bioinformatics, genomics, proteinomics, data compression, Sequence Analysis and Graphs, information retrieval, data analysis, and pattern recognition.
Pattern Recognition in Bioinformatics
In the post-genomic era, a holistic understanding of biological systems and p- cesses,inalltheircomplexity,is criticalincomprehendingnature’schoreography of life. As a result, bioinformatics involving its two main disciplines, namely, the life sciences and the computational sciences, is fast becoming a very promising multidisciplinary research ?eld. With the ever-increasing application of lar- scalehigh-throughputtechnologies,suchasgeneorproteinmicroarraysandmass spectrometry methods, the enormous body of information is growing rapidly. Bioinformaticians are posed with a large number of di?cult problems to solve, arising not only due to the complexities in acquiring the molecular infor- ti...
Algorithms and Computation
This book constitutes the refereed proceedings of the 15th International Symposium on Algorithms and Computation, ISAAC 2004, held in Hong Kong, China in December 2004. The 76 revised full papers presented were carefully reviewed and selected from 226 submissions. Among the topics addressed are computational geometry, graph computations, computational combinatorics, combinatorial optimization, computational complexity, scheduling, distributed algorithms, parallel algorithms, data structures, network optimization, randomized algorithms, and computational mathematics more generally.
Theory and Applications of Models of Computation
This book constitutes the refereed proceedings of the 4th International Conference on Theory and Applications of Models of Computation, TAMC 2007, held in Shanghai, China in May 2007. It addresses all major areas in computer science; mathematics, especially logic; and the physical sciences, particularly with regard to computation and computability theory. The papers particularly focus on algorithms, complexity and computability theory.
