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Physics of Bio-Molecules and Cells
Aimed at those working to enter this rapidly developing field, this volume on biological physics is written in a pedagogical style by leading scientists giving explanations that take their starting point where any physicist can follow and end at the frontier of research in biological physics. These lectures describe the state-of-the-art physics of biomolecules and cells. In biological systems ranging from single biomolecules to entire cells and larger biological systems, it focuses on aspects that require concepts and methods from physics for their analysis and understanding, such as the mechanics of motor proteins; how the genetic code is physically read and managed; the machinery of protein--DNA interactions; force spectroscopy of biomolecules' velopes, cytoskeletons, and cytoplasms; polymerization forces; listeria propulsion; cell motility; lab-on-a-chip nanotechnology for single-molecule analysis of biomolecules; bioinformatics; and coding and computational strategies of the brain.
Irreversibility and Dissipation in Microscopic Systems
After an insightful introductory part on recent developments in the thermodynamics of small systems, the author presents his contribution to a long-standing problem, namely the connection between irreversibility and dissipation. He develops a method based on recent results on fluctuation theorems that is able to estimate dissipation using only information acquired in a single, sufficiently long, trajectory of a stationary nonequilibrium process. This part ends with a remarkable application of the method to the analysis of biological data, in this case, the fluctuations of a hair bundle. The third part studies the energetics of systems that undergo symmetry breaking transitions. These theoretical ideas lead to, among other things, an experimental realization of a Szilard engine using manipulated colloids. This work has the potential for important applications ranging from the analysis of biological media to the design of novel artificial nano-machines.
Biophysics of the Cochlea
This book contains the proceedings of an international hearing-research conference held in Germany 2002. The conference brought together experts in genetics, molecular and cellular biology, physiology, engineering, physics, mathematics, audiology and medicine to synthesize and extend our understanding of how the cochlea works. Topics are discussed experimentally and theoretically at the molecular, cellular and whole-organ levels. Some of the topics are: mechanosensitivity of motor proteins; mechanochemical transduction by motor proteins; mechanoelectrical transduction in the stereocilia of hair cells; electromechanical transduction in the stereocilia, soma and synapses of hair cells; multidimensional vibration of the organ of Corti; and otoacoustic emissions. This book will be invaluable to researchers and students in auditory science.
Physical Sciences and Engineering Advances in Life Sciences and Oncology
This book presents an Assessment of Physical Sciences and Engineering Advances in Life Sciences and Oncology (APHELION) by a panel of experts. It covers the status and trends of applying physical sciences and engineering principles to oncology research in leading laboratories and organizations in Europe and Asia. The book elaborates on the six topics identified by the panel that have the greatest potential to advance understanding and treatment of cancer, each covered by a chapter in the book. The study was sponsored by the National Cancer Institute (NCI) at the National Institute of Health (NIH), the National Science Foundation (NSF) and the National Institute of Biomedical Imaging and Bioengineering at the NIH in the US under a cooperative agreement with the World Technology Evaluation Center (WTEC).
Solvent Engineering
This book aims to present the concept of Solvent Engineering within a broad scope, ranging from mixtures of solvents to achieve the desired solvation properties, to stimuli-responsive solvents. It covers diverse aspects such as thermodynamics and transfer phenomena associated with solvent engineering, as well as applications found in recent literature, spanning materials across science, biochemistry, chemistry, and separation and purification processes, among others. Solvent engineering is proposed as an innovative strategy to address environmental concerns related to the use of volatile and toxic solvents. This book highlights efforts to develop engineered solvents that offer more environmentally acceptable alternatives as against those currently in use.
Unsolved Problems of Noise and Fluctuations
All papers in this proceedings volume were peer reviewed. The purview of this third conference was shifted toward biology and medicine. Among the topics covered were: the constructive role of noise in the central nervous system, neuronal networks, and sensory transduction (hearing in humans, photo- and electroreception in marine animals), encoding of information into nerve pulse trains, single molecules and noise (including single molecule detection and characterization by nanopores - molecular "Coulter counting"), concepts of noise in neurophysiology (randomness and order in brain and heart electrical activities under normal conditions and in pathology), the role of noise in genetic regulation and gene expression, biosensors, etc.
New Trends in the Physics and Mechanics of Biological Systems
In July 2009, many experts in the mathematical modelling of biological sciences gathered in Les Houches for a 4-week summer school on the mechanics and physics of biological systems. The goal of the school was to present to students and researchers an integrated view of new trends and challenges in physical and mathematical aspects of biomechanics. While the scope for such a topic is very wide, we focused on problems where solid and fluid mechanics play a central role. The school covered both the general mathematical theory of mechanical biology in the context of continuum mechanics but also the specific modelling of particular systems in the biology of the cell, plants, microbes, and in physiology. These lecture notes are organised (as was the school) around five different main topics all connected by the common theme of continuum modelling for biological systems: Bio-fluidics, Bio-gels, Bio-mechanics, Bio-membranes, and Morphogenesis. These notes are not meant as a journal review of the topic but rather as a gentle tutorial introduction to the readers who want to understand the basic problematic in modelling biological systems from a mechanics perspective.
The Restless Cell
An essential introduction to the physics of active matter and its application to questions in biology In recent decades, the theory of active matter has emerged as a powerful tool for exploring the differences between living and nonliving states of matter. The Restless Cell provides a self-contained, quantitative description of how the continuum theory of matter has been generalized to account for the complex and sometimes counterintuitive behaviors of living materials. Christina Hueschen and Rob Phillips begin by illustrating how classical field theory has been used by physicists to describe the transport of matter by diffusion, the elastic deformations of solids, and the flow of fluids. Dr...
Active Materials
What are active materials? This book aims to introduce and redefine conceptions of matter by considering materials as entities that ‘sense’ and respond to their environment. By examining the modeling of, the experiments on, and the construction of these materials, and by developing a theory of their structure, their collective activity, and their functionality, this volume identifies and develops a novel scientific approach to active materials. Moreover, essays on the history and philosophy of metallurgy, chemistry, biology, and materials science provide these various approaches to active materials with a historical and cultural context. The interviews with experts from the natural scien...
