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Bayesian Inference for Gene Expression and Proteomics
Expert overviews of Bayesian methodology, tools and software for multi-platform high-throughput experimentation.
Statistical Methods in Epilepsy
Epilepsy research promises new treatments and insights into brain function, but statistics and machine learning are paramount for extracting meaning from data and enabling discovery. Statistical Methods in Epilepsy provides a comprehensive introduction to statistical methods used in epilepsy research. Written in a clear, accessible style by leading authorities, this textbook demystifies introductory and advanced statistical methods, providing a practical roadmap that will be invaluable for learners and experts alike. Topics include a primer on version control and coding, pre-processing of imaging and electrophysiological data, hypothesis testing, generalized linear models, survival analysis,...
Advances in Statistical Bioinformatics
This book describes the integration of high-throughput bioinformatics data from multiple platforms to inform our understanding of the functional consequences of genomic alterations.
Handbook of Bayesian Variable Selection
Bayesian variable selection has experienced substantial developments over the past 30 years with the proliferation of large data sets. Identifying relevant variables to include in a model allows simpler interpretation, avoids overfitting and multicollinearity, and can provide insights into the mechanisms underlying an observed phenomenon. Variable selection is especially important when the number of potential predictors is substantially larger than the sample size and sparsity can reasonably be assumed. The Handbook of Bayesian Variable Selection provides a comprehensive review of theoretical, methodological and computational aspects of Bayesian methods for variable selection. The topics cov...
Statistical Analysis for High-Dimensional Data
This book features research contributions from The Abel Symposium on Statistical Analysis for High Dimensional Data, held in Nyvågar, Lofoten, Norway, in May 2014. The focus of the symposium was on statistical and machine learning methodologies specifically developed for inference in “big data” situations, with particular reference to genomic applications. The contributors, who are among the most prominent researchers on the theory of statistics for high dimensional inference, present new theories and methods, as well as challenging applications and computational solutions. Specific themes include, among others, variable selection and screening, penalised regression, sparsity, thresholding, low dimensional structures, computational challenges, non-convex situations, learning graphical models, sparse covariance and precision matrices, semi- and non-parametric formulations, multiple testing, classification, factor models, clustering, and preselection. Highlighting cutting-edge research and casting light on future research directions, the contributions will benefit graduate students and researchers in computational biology, statistics and the machine learning community.
Advances in Statistical Bioinformatics
Providing genome-informed personalized treatment is a goal of modern medicine. Identifying new translational targets in nucleic acid characterizations is an important step toward that goal. The information tsunami produced by such genome-scale investigations is stimulating parallel developments in statistical methodology and inference, analytical frameworks, and computational tools. Within the context of genomic medicine and with a strong focus on cancer research, this book describes the integration of high-throughput bioinformatics data from multiple platforms to inform our understanding of the functional consequences of genomic alterations. This includes rigorous and scalable methods for simultaneously handling diverse data types such as gene expression array, miRNA, copy number, methylation, and next-generation sequencing data. This material is written for statisticians who are interested in modeling and analyzing high-throughput data. Chapters by experts in the field offer a thorough introduction to the biological and technical principles behind multiplatform high-throughput experimentation.
Handbook of Bayesian Variable Selection
Bayesian variable selection has experienced substantial developments over the past 30 years with the proliferation of large data sets. Identifying relevant variables to include in a model allows simpler interpretation, avoids overfitting and multicollinearity, and can provide insights into the mechanisms underlying an observed phenomenon. Variable selection is especially important when the number of potential predictors is substantially larger than the sample size and sparsity can reasonably be assumed. The Handbook of Bayesian Variable Selection provides a comprehensive review of theoretical, methodological and computational aspects of Bayesian methods for variable selection. The topics cov...
Bayesian Estimation and Inference in Computational Anatomy and Neuroimaging: Methods & Applications
Computational Anatomy (CA) is an emerging discipline aiming to understand anatomy by utilizing a comprehensive set of mathematical tools. CA focuses on providing precise statistical encodings of anatomy with direct application to a broad range of biological and medical settings. During the past two decades, there has been an ever-increasing pace in the development of neuroimaging techniques, delivering in vivo information on the anatomy and physiological signals of different human organs through a variety of imaging modalities such as MRI, x-ray, CT, and PET. These multi-modality medical images provide valuable data for accurate interpretation and estimation of various biological parameters ...
Bayesian Inference in Wavelet-Based Models
This volume presents an overview of Bayesian methods for inference in the wavelet domain. The papers in this volume are divided into six parts: The first two papers introduce basic concepts. Chapters in Part II explore different approaches to prior modeling, using independent priors. Papers in the Part III discuss decision theoretic aspects of such prior models. In Part IV, some aspects of prior modeling using priors that account for dependence are explored. Part V considers the use of 2-dimensional wavelet decomposition in spatial modeling. Chapters in Part VI discuss the use of empirical Bayes estimation in wavelet based models. Part VII concludes the volume with a discussion of case studi...
Statistical Analysis of Microbiome Data
Microbiome research has focused on microorganisms that live within the human body and their effects on health. During the last few years, the quantification of microbiome composition in different environments has been facilitated by the advent of high throughput sequencing technologies. The statistical challenges include computational difficulties due to the high volume of data; normalization and quantification of metabolic abundances, relative taxa and bacterial genes; high-dimensionality; multivariate analysis; the inherently compositional nature of the data; and the proper utilization of complementary phylogenetic information. This has resulted in an explosion of statistical approaches ai...
