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Biological Network Analysis
Biological Network Analysis: Trends, Approaches, Graph Theory, and Algorithms considers three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN), and Human Brain Connectomes. The book's authors discuss various graph theoretic and data analytics approaches used to analyze these networks with respect to available tools, technologies, standards, algorithms and databases for generating, representing and analyzing graphical data. As a wide variety of algorithms have been developed to analyze and compare networks, this book is a timely resource. Presents recent advances in biological network analysis, combining Graph Theory, Graph Analysis, and various network models Discusses three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN) and Human Brain Connectomes Includes a discussion of various graph theoretic and data analytics approaches
Data Management of Protein Interaction Networks
Current PPI databases do not offer sophisticated querying interfaces and especially do not integrate existing information about proteins. Current algorithms for PIN analysis use only topological information, while emerging approaches attempt to exploit the biological knowledge related to proteins and kinds of interaction, e.g. protein function, localization, structure, described in Gene Ontology or PDB. The book discusses technologies, standards and databases for, respectively, generating, representing and storing PPI data. It also describes main algorithms and tools for the analysis, comparison and knowledge extraction from PINs. Moreover, some case studies and applications of PINs are also discussed.
Computational Science – ICCS 2019
The five-volume set LNCS 11536, 11537, 11538, 11539, and 11540 constitutes the proceedings of the 19th International Conference on Computational Science, ICCS 2019, held in Faro, Portugal, in June 2019. The total of 65 full papers and 168 workshop papers presented in this book set were carefully reviewed and selected from 573 submissions (228 submissions to the main track and 345 submissions to the workshops). The papers were organized in topical sections named: Part I: ICCS Main Track Part II: ICCS Main Track; Track of Advances in High-Performance Computational Earth Sciences: Applications and Frameworks; Track of Agent-Based Simulations, Adaptive Algorithms and Solvers; Track of Applicatio...
From Grid to Healthgrid
This publication provides a forum for projects in the medical, biological and biomedical domains as well as for grid projects that seek to integrate these. The overall objective is to reinforce and promote the awareness of the deployment of grid technology in health. The emphasis is on results of current grid projects in health care. This will show in the outcome of field tests and will identify deployment strategies for prototype applications in health care. In addition, outstanding problem areas and technological challenges are identified and new solutions to these issues are proposed. From Grid to Healthgrid is divided in four themes: Knowledge and Data Management; Deployments of Grids in Health; Current Projects; and - Ethical, Legal, Social and Security Issues. The papers show that healthgrid has matured beyond its original projects and is now tackling some difficult problems that seemed intractable up till two years ago.
Biological Knowledge Discovery Handbook
The first comprehensive overview of preprocessing, mining, and postprocessing of biological data Molecular biology is undergoing exponential growth in both the volume and complexity of biological data and knowledge discovery offers the capacity to automate complex search and data analysis tasks. This book presents a vast overview of the most recent developments on techniques and approaches in the field of biological knowledge discovery and data mining (KDD) providing in-depth fundamental and technical field information on the most important topics encountered. Written by top experts, Biological Knowledge Discovery Handbook: Preprocessing, Mining, and Postprocessing of Biological Data covers ...
Fuzzy Logic and Soft Computing Applications
This book constitutes the proceedings of the 11th International Workshop on Fuzzy Logic and Applications, WILF 2016, held in Naples, Italy, in December 2016. The 22 revised full papers presented together with 2 invited lectures were carefully reviewed and selected from numerous submissions. The papers are organized in topical sections on fuzzy measures and transforms; granularity and multi-logics, clustering and learning; knowledge systems; and soft computing and applications.
Computational Science – ICCS 2020
The seven-volume set LNCS 12137, 12138, 12139, 12140, 12141, 12142, and 12143 constitutes the proceedings of the 20th International Conference on Computational Science, ICCS 2020, held in Amsterdam, The Netherlands, in June 2020.* The total of 101 papers and 248 workshop papers presented in this book set were carefully reviewed and selected from 719 submissions (230 submissions to the main track and 489 submissions to the workshops). The papers were organized in topical sections named: Part I: ICCS Main Track Part II: ICCS Main Track Part III: Track of Advances in High-Performance Computational Earth Sciences: Applications and Frameworks; Track of Agent-Based Simulations, Adaptive Algorithms...
The Semantic Web: Research and Applications
This book constitutes the refereed proceedings of the 6th European Semantic Web Conference, ESWC 2009, held in Heraklion, Crete, Greece, in May/June 2009. The 45 revised full papers of the research track presented together with the abstracts of 4 keynote lectures were carefully reviewed and selected from more than 250 submissions. The papers are organized in topical sections on applications, evaluation and benchmarking, ontologies and natural language, ontology alignment, ontology engineering, query processing, reasoning, search and identities, semantic Web architectures, semantic Web services, and tagging and annotation. In addition to the technical research track, this book presents 8 contributions to the ESWC 2009 PhD symposium, 24 system demo papers, as well as 8 contributions to the semantic Web in-use track.
Bioinformatics and Biomedical Engineering
This volume constitutes the proceedings of the 9th International Work-Conference on IWBBIO 2020, held in Maspalomas, Gran Canaria, Spain, in June 2022. The total of 75 papers presented in the proceedings, was carefully reviewed and selected from 212 submissions. The papers cover the latest ideas and realizations in the foundations, theory, models, and applications for interdisciplinary and multidisciplinary research encompassing disciplines of computer science, mathematics, statistics, biology, bioinformatics, and biomedicine.
Euro-Par 2019: Parallel Processing Workshops
This book constitutes revised selected papers from the workshops held at 25th International Conference on Parallel and Distributed Computing, Euro-Par 2019, which took place in Göttingen, Germany, in August 2019. The 53 full papers and 10 poster papers presented in this volume were carefully reviewed and selected from 77 submissions. Euro-Par is an annual, international conference in Europe, covering all aspects of parallel and distributed processing. These range from theory to practice, from small to the largest parallel and distributed systems and infrastructures, from fundamental computational problems to full-edged applications, from architecture, compiler, language and interface design and implementation to tools, support infrastructures, and application performance aspects. Chapter "In Situ Visualization of Performance-Related Data in Parallel CFD Applications" is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.
