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Pearls of Algorithm Engineering
This book covers algorithmic problems in big data applications, presenting solutions over hierarchical-memory systems along with pseudocode.
Large-scale Genome Sequence Processing
Efficient computer programs have made it possible to elucidate and analyze large-scale genomic sequences. Fundamental tasks, such as the assembly of numerous whole-genome shotgun fragments, the alignment of complementary DNA sequences with a long genome, and the design of gene-specific primers or oligomers, require efficient algorithms and state-of-the-art implementation techniques. This textbook emphasizes basic software implementation techniques for processing large-scale genome sequences and provides executable sample programs./a
Combinatorial Pattern Matching
This book constitutes the refereed proceedings of the 24th Annual Symposium on Combinatorial Pattern Matching, CPM 2013, held in Bad Herrenalb (near Karlsruhe), Germany, in June 2013. The 21 revised full papers presented together with 2 invited talks were carefully reviewed and selected from 51 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees, regular expressions, graphs, point sets, and arrays. The goal is to derive non-trivial combinatorial properties of such structures and to exploit these properties in order to either achieve superior performance for the corresponding computational problem or pinpoint conditions under which searches cannot be performed efficiently. The meeting also deals with problems in computational biology, data compression and data mining, coding, information retrieval, natural language processing, and pattern recognition.
Database and Expert Systems Applications
This two volume set of LNCS 11706 and LNCS 11707 constitutes the refereed proceedings of the 30th International Conference on Database and Expert Systems Applications, DEXA 2019, held in Linz, Austria, in August 2019. The 32 full papers presented together with 34 short papers were carefully reviewed and selected from 157 submissions. The papers are organized in the following topical sections: Part I: Big data management and analytics; data structures and data management; management and processing of knowledge; authenticity, privacy, security and trust; consistency, integrity, quality of data; decision support systems; data mining and warehousing. Part II: Distributed, parallel, P2P, grid and cloud databases; information retrieval; Semantic Web and ontologies; information processing; temporal, spatial, and high dimensional databases; knowledge discovery; web services.
Algorithms and Computation
This book constitutes the refereed proceedings of the 22nd International Symposium on Algorithms and Computation, ISAAC 2011, held in Yokohama, Japan in December 2011. The 76 revised full papers presented together with two invited talks were carefully reviewed and selected from 187 submissions for inclusion in the book. This volume contains topics such as approximation algorithms; computational geometry; computational biology; computational complexity; data structures; distributed systems; graph algorithms; graph drawing and information visualization; optimization; online and streaming algorithms; parallel and external memory algorithms; parameterized algorithms; game theory and internet algorithms; randomized algorithms; and string algorithms.
WALCOM: Algorithms and Computation
This book constitutes the proceedings of the 12th International Workshop on Algorithms and Computation, WALCOM 2018, held in Dhaka, Bangladesh, in March 2018. The 22 full papers presented were carefully reviewed and selected from 50 submissions. The papers cover diverse areas of algorithms and computation, such as approximation algorithms, computational geometry, combinatorial algorithms, computational biology, computational complexity, data structures, graph and network algorithms, and online algorithms.
Database Systems for Advanced Applications
This book constitutes the refereed proceedings of the 14th International Conference on Database Systems for Advanced Applications, DASFAA 2009, held in Brisbane, Australia, in April 2009. The 39 revised full papers and 22 revised short papers presented together with 3 invited keynote papers, 9 demonstration papers, 3 tutorial abstracts, and one panel abstract were carefully reviewed and selected from 186 submissions. The papers are organized in topical sections on uncertain data and ranking, sensor networks, graphs, RFID and data streams, skyline and rising stars, parallel and distributed processing, mining and analysis, XML query, privacy, XML keyword search and ranking, Web and Web services, XML data processing, and multimedia.
Foundations of Software Science and Computation Structures
This open access book constitutes the proceedings of the 26th International Conference on Foundations of Software Science and Computational Structures, FOSSACS 2023, which was held during April 22-27, 2023, in Paris, France, as part of the European Joint Conferences on Theory and Practice of Software, ETAPS 2023. The 26 regular papers presented in this volume were carefully reviewed and selected from 85 submissions. They deal with research on theories and methods to support the analysis, integration, synthesis, transformation, and verification of programs and software systems.
Algorithms in Bioinformatics
This book constitutes the refereed proceedings of the 14th International Workshop on Algorithms in Bioinformatics, WABI 2014, held in Wroclaw, Poland, in September 2014. WABI 2014 was one of seven conferences that were organized as part of ALGO 2014. WABI is an annual conference series on all aspects of algorithms and data structure in molecular biology, genomics and phylogeny data analysis. The 26 full papers presented together with a short abstract were carefully reviewed and selected from 61 submissions. The selected papers cover a wide range of topics from sequence and genome analysis through phylogeny reconstruction and networks to mass spectrometry data analysis.
Repetitive Structures in Biological Sequences: Algorithms and Applications
Repetitive structures in biological sequences are emerging as an active focus of research and the unifying concept of "repeatome" (the ensemble of knowledge associated with repeating structures in genomic/proteomic sequences) has been recently proposed in order to highlight several converging trends. One main trend is the ongoing discovery that genomic repetitions are linked to many biological significant events and functions. Diseases (e.g. Huntington's disease) have been causally linked with abnormal expansion of certain repeating sequences in the human genome. Deletions or multiple copy duplications of genes (Copy Number Variations) are important in the aetiology of cancer, Alzheimer, and...
