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Population Genomics: Microorganisms
Population genomics is a rapidly emerging field that has the potential to transform our understanding of how evolutionary forces shape genomic diversity among microbes. There have already been considerable advances in understanding gene flow and spread of adaptive traits, and in linking epidemiology with evolutionary biology. The current challenge is to find unifying evolutionary principles for organisms that display a wide range of reproductive biology – from highly clonal to promiscuous – and for which the vast majority have eluded cultivation. This requires interdisciplinary approaches that incorporate novel computational tools, testing of existing and novel population genetic models, and creative new ways of linking genetic diversity to ecological factors. This pioneering book will discuss the advances made and promises of population genomics in microorganisms, outlining some of the key theoretical and practical challenges for microbial population genomics, including defining and identifying populations, genomics-based reverse ecology and building appropriate tools to understand microbes in a variety of complex environments.
Oceans and Health:
It is surprising how little is actually known about the fate of wastewater bacteria once they enter the sea. This wide-ranging work is one of the first to unravel the mechanisms determining bacterial sensitivity or survival under these conditions.
Anthropogenic Impacts on the Microbial Ecology and Function of Aquatic Environments
Aquatic ecosystems are currently experiencing unprecedented levels of impact from human activities including over-exploitation of resources, habitat destruction, pollution and the influence of climate change. The impacts of these activities on the microbial ecology of aquatic environments are only now beginning to be defined. One of the many implications of environmental degradation and climate change is the geographical expansion of disease- causing microbes such as those from the Vibrio genus. Elevating sea surface temperatures correlate with increasing Vibrio numbers and disease in marine animals (e.g. corals) and humans. Contamination of aquatic environments with heavy metals and other p...
Microbes in Agri-Forestry Biotechnology
This book explores recent advances on the use of microbes for agri-forestry biotechnological applications. It provides technical concepts and discussions on the use of microorganisms for processes such as bioprocessing, bioremediation, soil enhancement, aquaponics advances, and plant-host symbiosis. The book provides an overview of the microbial approach to the tools and processes used in agriculture and forestry that make or modify products, improve plants for specific uses, and make use of livestock in agricultural systems. The authors discuss the main process conditions that enhance agri-forestry applications with the use of microbes and introduce the use of genetically modified (GM) microbes in agrobiotechnology. Finally, the authors explore the main technological advances in the production of secondary metabolites with potential applications in agri-forestry. This book is intended for biotechnologists, biologists, bioengineers, biochemists, microbiologists, food technologists, enzymologists, and related researchers.
Can Microbial Communities Regenerate?
"You take antibiotics to fight an infection. Unfortunately, the treatment also kills the community of bacteria in your gut microbiome; you now have digestion issues. You might start eating yogurt to reintroduce good bacteria. Or, if the bacterial community is more significantly disordered, you might need a "fecal microbiota transplant" - a doctor transfers stool from a healthy donor into your gut. The new bacteria community thrives, and you can again digest your food. If all the same types of bacteria are present in this new community, has your microbiome "regenerated"? What if the bacteria are completely different, but they perform the same function? How do the answers to these questions ch...
Bioinformatic and Statistical Analysis of Microbiome Data
This unique book addresses the bioinformatic and statistical modelling and also the analysis of microbiome data using cutting-edge QIIME 2 and R software. It covers core analysis topics in both bioinformatics and statistics, which provides a complete workflow for microbiome data analysis: from raw sequencing reads to community analysis and statistical hypothesis testing. It includes real-world data from the authors’ research and from the public domain, and discusses the implementation of QIIME 2 and R for data analysis step-by-step. The data as well as QIIME 2 and R computer programs are publicly available, allowing readers to replicate the model development and data analysis presented in each chapter so that these new methods can be readily applied in their own research. Bioinformatic and Statistical Analysis of Microbiome Data is an ideal book for advanced graduate students and researchers in the clinical, biomedical, agricultural, and environmental fields, as well as those studying bioinformatics, statistics, and big data analysis.
Vibrio ecology, pathogenesis and evolution
Vibrios are Gram-negative bacilli that occur naturally in marine, estuarine, and freshwater systems. Some species include human and animal pathogens capable of causing gastroenteritis, wound infections, cholera, and fatal septicemia. Over the past decades, cutting edge research on Vibrio genomics has promoted a tremendous advance in our knowledge of these pathogens. Significant developments include the discovery of emerging epidemic clones, tracking the spread of new strain variants, and an intensified appreciation of the role of mobile genetic elements in antibiotic resistance spread as well as pathogenesis. Furthermore, improved understanding of the interaction of Vibrios with a variety of living organisms in the aquatic environment has documented the significant role of environmental reservoirs in their seasonal cycle favoring persistence of the pathogen during inter-epidemic periods and enhancing disease transmission. This Research Topic is dedicated to our current understanding in these areas and will bring together leading experts in the field to provide a deep overview of Vibrios ecology and evolution, and will suggest the pathway of future research in this field.
Basic Concepts and Recent Advances in Microbial Diversity, Taxonomy, Speciation and Evolution
This book delves into the fundamental principles that underpin the classification and understanding of bacteria, from the basic concepts to the latest advances. This book encompasses numerous topics related to diversity, such as speciation and evolution of species, microbial diversity, and methods for estimating diversity and taxonomy of bacteria. The reader can gain valuable insights into the cutting-edge techniques used to identify and classify bacteria, such as genomics, metagenomics, and phylogenetic analysis. With expert contributions from leading scientists, this comprehensive guide offers a holistic view of the microbial world in the context of their role in global biodiversity, and explores the upcoming role of machine learning and artificial intelligence for exploration of bacterial diversity. For students and researchers in microbiology, genetics and biotechnology, this book is an essential resource for unravelling the mysteries of bacterial speciation, evolution, diversity, and taxonomy.
Introduction to BioMEMS
The entire scope of the BioMEMS field—at your fingertips Helping to educate the new generation of engineers and biologists, Introduction to BioMEMS explains how certain problems in biology and medicine benefit from and often require the miniaturization of devices. The book covers the whole breadth of this dynamic field, including classical microfabrication, microfluidics, tissue engineering, cell-based and noncell-based devices, and implantable systems. It focuses on high-impact, creative work encompassing all the scales of life—from biomolecules to cells, tissues, and organisms. Brilliant color presentation Avoiding the overwhelming details found in many engineering and physics texts, t...
MICROBIOLOGY
Embark on a captivating journey into the microscopic world with our specialized guide, "Microbiology." Tailored for students, researchers, and enthusiasts in microbial sciences, this comprehensive book delves into the intricacies of microbiology. Enriched with in-depth insights, practical knowledge, and extensive Multiple-Choice Question (MCQ) practice, "Microbiology" is designed to deepen your understanding of microorganisms and their impact on various fields. Key Features: Microbial World Unveiled: Dive into the diverse realm of microorganisms, from bacteria and viruses to fungi and protozoa. "Microbiology" provides a comprehensive guide to understanding the structure, function, and signif...
