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Computational Approaches in Aid of Advancing Understanding in Plant Physiology
The recent data flood has required greater and greater reliance on computational usage in plant biology. This Research Topic will focus on the utility of computational approaches across the breadth of modern plant biology with particular focus on the following areas: (i) Comparative genomics- gene family size in the green lineage (ii) Adaptive evolution - specifics of development (iii) Adaptive evolution - specifics of secondary metabolism (iv) Translational biology- co-response analysis from arabidopsis outwards (v) Conserved(and differential) transcriptional response to stress (vi) Transcriptomics databases (vii) Translatomics (ix) Proteomics- abundance (x) Proteomics- location, (xi) Proteomics- interactions (xii) Proteomics databases (xiii) he activome (xiv)Metabolite-abundance (xv) metabolite- location (xvi) Experimental flux calculations, (xvii)dvanced metabolomic technologies (xviii) metabolite databases (xix) Genome wide metabolic modelling
Plant Systems Biology
This volume aims to provide a timely view of the state-of-the-art in systems biology. The editors take the opportunity to define systems biology as they and the contributing authors see it, and this will lay the groundwork for future studies. The volume is well-suited to both students and researchers interested in the methods of systems biology. Although the focus is on plant systems biology, the proposed material could be suitably applied to any organism.
Cereal Crops
Cereal Crops: Genetic Resources and Breeding Techniques provides the reader practical tools for understanding relationships and challenges of successful farming; improvements to genetic modifications; and environmentally sound methods of production of bulk and quality cereals including wheat, maize, rice, barley, and millets. It explores the trait mapping, cropping systems, genome engineering, and identification of specific germplasms needed for the more effective development of biotic and abiotic stress resistant cereals within the framework of ensuring future food supplies around the world. Features: Focuses on cropping systems, genetics and genome engineering for higher crop production at...
Metabolome Analyses:
Metabolome analysis is now recognized as a crucial component of functional genomic and systems biology investigations. Innovative approaches to the study of metabolic regulation in microbial, plant and animal systems are increasingly facilitating the emergence of systems approaches in biology. This book highlights analytical and bioinformatics strategies now available for investigating metabolic networks in microbial, plant and animal systems. The contributing authors are world leaders in this field and they present an unambiguous case for pursuing metabolome analysis as a means to attain a systems level understanding of complex biological systems.
Cell-Wide Identification of Metabolite-Protein Interactions
This thorough volume explores protocols of proteome- and metabolome-wide strategies for the identification of protein-small molecule complexes in different organisms, in order to shed light on these important regulatory interactions. Experimental and computational strategies to characterize protein-metabolite interactions are discussed, and recent advances in enabling technologies are featured as well. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of detail and expert implementation advice to ensure success in future research. Authoritative and practical, Cell-Wide Identification of Metabolite-Protein Interactions will aid researchers seeking a better understanding of the mechanisms of signal transduction occurring in the cell and assessing the effect of complex formation on cell physiology.
The Molecular Biology and Biochemistry of Fruit Ripening
A comprehensive and mechanistic perspective on fruit ripening, emphasizing commonalities and differences between fruit groups and ripening processes. Fruits are an essential part of the human diet and contain important phytochemicals that provide protection against heart disease and cancers. Fruit ripening is of importance for human health and for industry-based strategies to harness natural variation, or genetic modification, for crop improvement. This book covers recent advances in the field of plant genomics and how these discoveries can be exploited to understand evolutionary processes and the complex network of hormonal and genetic control of ripening. The book explains the physiochemic...
Systems Biology
Systems biology is a relatively new biological study field that focuses on the systematic study of complex interactions in biological systems, thus using a new perspective (integration instead of reduction) to study them. Particularly from year 2000 onwards, the term is used widely in the biosciences, and in a variety of contexts. Systems biology is the study of the interconnected aspect of molecular, cellular, tissue, whole animal and ecological processes, and comprises mathematical and mechanistic studies of dynamical, mesoscopic, open, spatiotemporally defined, nonlinear, complex systems that are far from thermodynamic equilibrium.
Arabidopsis 2010 and beyond – big science with a small weed
Over the past two decades revolutionary progress in plant biology became possible by focusing resources on a single plant reference system, Arabidopsis thaliana. After the completion of the Arabidopsis genome sequence in the year 2000, a coordinated multinational effort was launched to “determine the function of every gene in Arabidopsis” by the year 2010. While this ambitious goal has not yet been fully achieved, the Arabidopsis genome is now one of the best annotated and serves as the gold standard for plant and other genomes. A large and international community has established genetic toolkits and genomic resources, such as sequence-indexed mutant collections and comprehensive and eas...
Starch
This book provides a detailed overview of the current understanding of the metabolic system of starch biosynthesis and degradation in plants. The focus is on new topics regarding the functional interaction between multiple enzymes and the initiation process of starch biosynthesis, which are essential for further understanding of related metabolic features. The book also explains and discusses the distinct structures of amylopectin and amylose and the crystalline structure of starch granules. At the same time, readers will be made aware of areas where further research remains to be done, such as the regulation of starch metabolism, the fine structure of starch molecules, and the manipulation ...
Renal Cell Carcinoma
Renal cancer is a health problem of major concern worldwide. Although tyrosine kinase inhibitors and immune check-point blockade treatments, alone or in combination, are giving promising results, failures are quite frequent due to intratumor heterogeneity and to the acquisition of drug resistance. The spectrum of renal cell carcinoma subtypes is wide. Up to 70–80% of renal tumors are clear cell renal cell carcinomas, a clinically aggressive tumor subtype linked to VHL gene inactivation. Next in frequency, the papillary renal cell carcinoma category encompasses an intricate puzzle of classic and newly described entities with poorly defined limits, some of them pending definite clarification...
