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The Logic of Chance
  • Language: en
  • Pages: 530

The Logic of Chance

  • Type: Book
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  • Published: 2011-06-23
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  • Publisher: FT Press

The Logic of Chance offers a reappraisal and a new synthesis of theories, concepts, and hypotheses on the key aspects of the evolution of life on earth in light of comparative genomics and systems biology. The author presents many specific examples from systems and comparative genomic analysis to begin to build a new, much more detailed, complex, and realistic picture of evolution. The book examines a broad range of topics in evolutionary biology including the inadequacy of natural selection and adaptation as the only or even the main mode of evolution; the key role of horizontal gene transfer in evolution and the consequent overhaul of the Tree of Life concept; the central, underappreciated...

Sequence — Evolution — Function
  • Language: en
  • Pages: 482

Sequence — Evolution — Function

Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as functional genomics. The book provides the reader with an understanding of the principles and approaches of functional genomics and of the potential and limitations of computational and experimental approaches to genome analysis. Sequence - Evolution - Function should help bridge the "digital divide" between biologists and computer scientists, allowing biologists to better grasp the peculiarities of the emerging field of Genome Biology and to learn how to benefit from the enormous amount of sequence data available in the public databases....

Evolutionary Genomics
  • Language: en
  • Pages: 556

Evolutionary Genomics

  • Type: Book
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  • Published: 2012-03-08
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  • Publisher: Humana Press

Together with early theoretical work in population genetics, the debate on sources of genetic makeup initiated by proponents of the neutral theory made a solid contribution to the spectacular growth in statistical methodologies for molecular evolution. Evolutionary Genomics: Statistical and Computational Methods is intended to bring together the more recent developments in the statistical methodology and the challenges that followed as a result of rapidly improving sequencing technologies. Presented by top scientists from a variety of disciplines, the collection includes a wide spectrum of articles encompassing theoretical works and hands-on tutorials, as well as many reviews with key biolog...

Evolutionary Biology - Concepts, Molecular and Morphological Evolution
  • Language: en
  • Pages: 367

Evolutionary Biology - Concepts, Molecular and Morphological Evolution

The annual Evolutionary Biology Meetings in Marseille aim to bring together leading scientists, promoting an exchange of state-of-the-art knowledge and the formation of inter-group collaborations. This book presents the most representative contributions to the 13th meeting, which was held in September 2009. It comprises 21 chapters, which are organized into the following three categories: • Evolutionary Biology Concepts • Genome/Molecular Evolution • Morphological Evolution/Speciation This book offers an up-to-date overview of evolutionary biology concepts and their use in the biology of the 21st century.

The Revolutionary Origins of Life and Death
  • Language: en
  • Pages: 236

The Revolutionary Origins of Life and Death

The question of why an individual would actively kill itself has long been an evolutionary mystery. Pierre M. Durand’s ambitious book answers this question through close inspection of life and death in the earliest cellular life. As Durand shows us, cell death is a fascinating lens through which to examine the interconnectedness, in evolutionary terms, of life and death. It is a truism to note that one does not exist without the other, but just how does this play out in evolutionary history? These two processes have been studied from philosophical, theoretical, experimental, and genomic angles, but no one has yet integrated the information from these various disciplines. In this work, Dura...

The Origin and Evolution of Eukaryotes
  • Language: en
  • Pages: 416

The Origin and Evolution of Eukaryotes

  • Type: Book
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  • Published: 2014
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  • Publisher: Unknown

All protists, fungi, animals, and plants on Earth are eukaryotes. Their cells possess membrane-bound organelles including a nucleus and mitochondria, distinct cytoskeletal features, and a unique chromosome structure that permits them to undergo mitosis or meiosis. The emergence of eukaryotic cells from prokaryotic ancestors about 2 billion years ago was a pivotal evolutionary transition in the history of life on Earth. But the change was abrupt, and few clues exist as to the nature of the intermediate stages. Written and edited by experts in the field, this collection from Cold Spring Harbor Perspectives in Biology examines evolutionary scenarios that likely led to the emergence and rapid ev...

Power Laws, Scale-Free Networks and Genome Biology
  • Language: en
  • Pages: 274

Power Laws, Scale-Free Networks and Genome Biology

Power Laws, Scale-free Networks and Genome Biology deals with crucial aspects of the theoretical foundations of systems biology, namely power law distributions and scale-free networks which have emerged as the hallmarks of biological organization in the post-genomic era. The chapters in the book not only describe the interesting mathematical properties of biological networks but moves beyond phenomenology, toward models of evolution capable of explaining the emergence of these features. The collection of chapters, contributed by both physicists and biologists, strives to address the problems in this field in a rigorous but not excessively mathematical manner and to represent different viewpoints, which is crucial in this emerging discipline. Each chapter includes, in addition to technical descriptions of properties of biological networks and evolutionary models, a more general and accessible introduction to the respective problems. Most chapters emphasize the potential of theoretical systems biology for discovery of new biological phenomena.

Microbial genomics challenge Darwin
  • Language: en
  • Pages: 179

Microbial genomics challenge Darwin

The 200th anniversary of Darwin’s birthday was celebrated in 2009, making the concept of Darwinism even more popular than at the time it was originally proposed, to the extent that it has acquired quasi-religious status. His theory revolves around a Tree of Life in which all living organisms are considered to have descended from a single ancestor, and each node represents a common ancestor. It comprises hierarchy and dichotomy, which are typical characteristics of the post-biblical 19th century vision. Indeed, according to post-modern philosophy (also called the French theory) the majority of theories, including scientific ones, are based only on meta-narratives expressing the influence of...

Evolutionary Genomics
  • Language: en

Evolutionary Genomics

  • Type: Book
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  • Published: 2012
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  • Publisher: Unknown

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Algorithms for Computational Biology
  • Language: en
  • Pages: 275

Algorithms for Computational Biology

  • Type: Book
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  • Published: 2014-06-07
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  • Publisher: Springer

This book constitutes the refereed proceedings of the First International Conference, AlCoB 2014, held in July 2014 in Tarragona, Spain. The 20 revised full papers were carefully reviewed and selected from 39 submissions. The scope of AlCoB includes topics of either theoretical or applied interest, namely: exact sequence analysis, approximate sequence analysis, pairwise sequence alignment, multiple sequence alignment, sequence assembly, genome rearrangement, regulatory motif finding, phylogeny reconstruction, phylogeny comparison, structure prediction, proteomics: molecular pathways, interaction networks, transcriptomics: splicing variants, isoform inference and quantification, differential analysis, next-generation sequencing: population genomics, metagenomics, metatranscriptomics, microbiome analysis, systems biology.