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Assessing the microbiota biodiversity of fermented food products, such as bacterial and fungal diversity, can inform on the nutritional value of such products as well as assessing the safety for consumption. Understanding the bacterial or fungal composition of such products is important to ensure food safety and prevent possible contamination with foodborne pathogens which may have serious public health implications. For example, the U.S Food and Drug Administration (2014) tested samples of cheeses prepared using unpasteurized milks and identified the presence of Listeria monocytogenes and Shiga-toxin producing Escherichia coli.
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