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Algorithms on Strings, Trees, and Sequences
  • Language: en
  • Pages: 556

Algorithms on Strings, Trees, and Sequences

String algorithms are a traditional area of study in computer science. In recent years their importance has grown dramatically with the huge increase of electronically stored text and of molecular sequence data (DNA or protein sequences) produced by various genome projects. This book is a general text on computer algorithms for string processing. In addition to pure computer science, the book contains extensive discussions on biological problems that are cast as string problems, and on methods developed to solve them. It emphasises the fundamental ideas and techniques central to today's applications. New approaches to this complex material simplify methods that up to now have been for the specialist alone. With over 400 exercises to reinforce the material and develop additional topics, the book is suitable as a text for graduate or advanced undergraduate students in computer science, computational biology, or bio-informatics. Its discussion of current algorithms and techniques also makes it a reference for professionals.

The Stable Marriage Problem
  • Language: en
  • Pages: 240

The Stable Marriage Problem

This book probes the stable marriage problem and its variants as a rich source of problems and ideas that illustrate both the design and analysis of efficient algorithms. It covers the most recent structural and algorithmic work on stable matching problems, simplifies and unifies many earlier proofs, strengthens several earlier results, and presents new results and more efficient algorithms. The authors develop the structure of the set of stable matchings in the stable marriage problem in a more general and algebraic context than has been done previously; they discuss the problem's structure in terms of rings of sets, which allows many of the most useful features to be seen as features of a ...

Algorithmics of Matching Under Preferences
  • Language: en
  • Pages: 524

Algorithmics of Matching Under Preferences

Matching problems with preferences are all around us OCo they arise when agents seek to be allocated to one another on the basis of ranked preferences over potential outcomes. Efficient algorithms are needed for producing matchings that optimise the satisfaction of the agents according to their preference lists.In recent years there has been a sharp increase in the study of algorithmic aspects of matching problems with preferences, partly reflecting the growing number of applications of these problems worldwide. This book describes the most important results in this area, providing a timely update to The Stable Marriage Problem: Structure and Algorithms (D Gusfield and R W Irving, MIT Press, 1989) in connection with stable matching problems, whilst also broadening the scope to include matching problems with preferences under a range of alternative optimality criteria."

Combinatorial Pattern Matching
  • Language: en
  • Pages: 434

Combinatorial Pattern Matching

  • Type: Book
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  • Published: 2003-06-29
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  • Publisher: Springer

This book constitutes the refereed proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching, CPM 2000, held in Montreal, Canada, in June 2000.The 29 revised full papers presented together with 3 invited contributions and 2 tutorial lectures were carefully reviewed and selected from 44 submissions. The papers are devoted to current theoretical and algorithmic issues of searching and matching strings and more complicated patterns such as trees, regular expression graphs, point sets and arrays as well as to advanced applications of CPM in areas such as Internet, computational biology, multimedia systems, information retrieval, data compression, and pattern recognition.

Algorithms and Data Structures
  • Language: en
  • Pages: 381

Algorithms and Data Structures

  • Type: Book
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  • Published: 2003-07-31
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  • Publisher: Springer

The papers in this volume were presented at the Sixth Workshop on Algorithms and Data Structures (WADS '99). The workshop took place August 11 - 14, 1999, in Vancouver, Canada. The workshop alternates with the Scandinavian Workshop on Algorithms Theory (SWAT), continuing the tradition of SWAT and WADS starting with SWAT'88 and WADS'89. In response to the program committee's call for papers, 71 papers were submitted. From these submissions, the program committee selected 32 papers for presentation at the workshop. In addition to these submitted papers, the program committee invited the following researchers to give plenary lectures at the workshop: C. Leiserson, N. Magnenat-Thalmann, M. Snir,...

Algorithms and Computation
  • Language: en
  • Pages: 472

Algorithms and Computation

Today the cemented joint prosthesis operation is one of the most frequent procedures in orthopaedic surgery. During the past 30 years the individual steps of such an operation have been carefully validated and thus allow for a reproducible and standardized operation, including a reliable prognosis for the maintenance of the joint. This manual is a practical guide to a complication preventing cementing technique, cement fixation, maintenance of the bone and diamond technique. Clear drawings and diagrams guide the reader through the pre-operative, peri-operative and post-operative steps. The manual covers all possible complications and gives clear instructions, so as to prevent complications but also to cope with them if they occur. Finally, it covers all forensic criteria to be considered.

Sequences II
  • Language: en
  • Pages: 485

Sequences II

This volume contains all papers presented at the workshop "Sequences '91: Methods in Communication, Security and Computer Science," which was held Monday, June 17, through Friday, June 21, 1991, at the Hotel Covo dei Saraceni, Positano, ltaly. The event was sponsored by the Dipartimento di Informatica ed Applicazioni of the University of Salerno and by the Dipartimento di Matematica of the University of Rome. We wish to express our warmest thanks to the members of the program Committee: Professor B. Bose, Professor S. Even, Professor Z. Galil, Professor A. Lempel, Professor J. Massey, Professor D. Perrin, and Professor J. Storer. Furthermore, Professor Luisa Gargano provided effective, cease...

Research in Computational Molecular Biology
  • Language: en
  • Pages: 565

Research in Computational Molecular Biology

  • Type: Book
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  • Published: 2007-05-18
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  • Publisher: Springer

This book constitutes the refereed proceedings of the 11th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2007, held in Oakland, CA, USA in April 2007. The 37 revised full papers address all current issues in algorithmic, theoretical, and experimental bioinformatics.

Bioinformatics and Phylogenetics
  • Language: en
  • Pages: 426

Bioinformatics and Phylogenetics

  • Type: Book
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  • Published: 2019-04-08
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  • Publisher: Springer

This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret’s research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest. Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelih...

Biological Sequence Analysis
  • Language: en
  • Pages: 372

Biological Sequence Analysis

Probabilistic models are becoming increasingly important in analysing the huge amount of data being produced by large-scale DNA-sequencing efforts such as the Human Genome Project. For example, hidden Markov models are used for analysing biological sequences, linguistic-grammar-based probabilistic models for identifying RNA secondary structure, and probabilistic evolutionary models for inferring phylogenies of sequences from different organisms. This book gives a unified, up-to-date and self-contained account, with a Bayesian slant, of such methods, and more generally to probabilistic methods of sequence analysis. Written by an interdisciplinary team of authors, it aims to be accessible to molecular biologists, computer scientists, and mathematicians with no formal knowledge of the other fields, and at the same time present the state-of-the-art in this new and highly important field.