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Environmental DNA
  • Language: en
  • Pages: 268

Environmental DNA

Environmental DNA (eDNA) refers to DNA that can be extracted from environmental samples (such as soil, water, feces, or air) without the prior isolation of any target organism. The analysis of environmental DNA has the potential of providing high-throughput information on taxa and functionalgenes in a given environment, and is easily amenable to the study of both aquatic and terrestrial ecosystems. It can provide an understanding of past or present biological communities as well as their trophic relationships, and can thus offer useful insights into ecosystem functioning. There is nowa rapidly-growing interest amongst biologists in applying analysis of environmental DNA to their own research. However, good practices and protocols dealing with environmental DNA are currently widely dispersed across numerous papers, with many of them presenting only preliminary results and using adiversity of methods. In this context, the principal objective of this practical handbook is to provide biologists (both students and researchers) with the scientific background necessary to assist with the understanding and implementation of best practices and analyses based on environmentalDNA.

Environmental DNA
  • Language: en

Environmental DNA

  • Type: Book
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  • Published: 2018
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  • Publisher: Unknown

None

Tracking Environmental Change Using Lake Sediments
  • Language: en
  • Pages: 450

Tracking Environmental Change Using Lake Sediments

This book, entitled Tracking Environmental Change Using Lake Sediments: Volume 6 – Sedimentary DNA, provides an overview of the applications of sedimentary DNA-based approaches to paleolimnological studies. These approaches have shown considerable potential in providing information about the long-term changes of overall biodiversity in lakes and their watersheds in response to natural and anthropogenic changes, as well as tracking human migrations over the last thousands of years. Although the first studies investigating the preservation of these molecular proxies in sediments originate from the late-1990s, the number of scientific publications on this topic has increased greatly over the last five years. Alongside numerous ecological findings, several sedimentary DNA studies have been dedicated to understanding the reliability of this approach to reconstruct past ecosystem changes. Despite the major surge of interest, a comprehensive compilation of sedimentary DNA approaches and applications has yet to be attempted. The overall aim of this DPER volume is to fill this knowledge gap.

Applied Environmental Genomics
  • Language: en
  • Pages: 369

Applied Environmental Genomics

DNA is the essence of life and the original ‘big data’. New technologies are allowing scientists to access and make sense of this information like never before, and they are using it to solve the world’s greatest environmental challenges. Applied Environmental Genomics synthesises the latest and most exciting uses of genomic technologies for environmental science and management. With an emphasis on diversity of applications and real-world demonstrations, leading researchers have contributed detailed chapters on innovative approaches to obtaining critical management-relevant information about the natural world. These chapters are complemented by perspective sections written by environmental managers who describe their experiences using genomics to support evidence-based decisions. Ideal for students, researchers and professionals working in natural resource management and policy, Applied Environmental Genomics is a comprehensive introduction to a fast-moving field that is transforming the practice of environmental management, with profound relevance to industry, government and the public.

A Biologist’s Guide to Artificial Intelligence
  • Language: en
  • Pages: 370

A Biologist’s Guide to Artificial Intelligence

  • Type: Book
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  • Published: 2024-03-15
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  • Publisher: Elsevier

A Biologist’s Guide to Artificial Intelligence: Building the Foundations of Artificial Intelligence and Machine Learning for Achieving Advancements in Life Sciences provides an overview of the basics of Artificial Intelligence for life science biologists. In 14 chapters/sections, readers will find an introduction to Artificial Intelligence from a biologist’s perspective, including coverage of AI in precision medicine, disease detection, and drug development. The book also gives insights into the AI techniques used in biology and the applications of AI in food, and in environmental, evolutionary, agricultural, and bioinformatic sciences. Final chapters cover ethical issues surrounding AI ...

Plant Ecogenomics
  • Language: en
  • Pages: 274

Plant Ecogenomics

  • Type: Book
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  • Published: 2022-11-03
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  • Publisher: CRC Press

This new volume offers a valuable introduction to plant ecology from a genomics point of view, presenting a thorough foundation and summary of modern approaches, methodologies, research goals, and evidence of plant ecology in the modern genomic era. The book also presents important updated information on the most recent knowledge of the different aspects of plant populations. The volume gives an overview of the approaches to unravelling the genetic basis underlying fundamental responses of plants to their natural environments, describing in detail the concepts, aims, and approaches of plant ecological genomics along with the genomic tools embraced by ecologists for mining various ecological problems. Recent advances and breakthroughs made in molecular markers along with their applications in plant ecogenomic studies are shared, and specific applications, techniques, and tools are described as well, such advanced molecular techniques, next-generation sequencing, eDNA metabarcoding, among others.

DNA metabarcoding
  • Language: en
  • Pages: 68

DNA metabarcoding

We present guidelines for using environmental DNA metabarcoding, together with conventional techniques, to monitor the taxonomic diversity of phytoplankton in marine and brackish waters. The focus is on eukaryotic and prokaryotic phytoplankton using 18S and 16S rRNA primers and high-throughput sequencing. Information and recommendations on sampling, sample processing, molecular biological work, quality control, bioinformatics, data storage and management and cost estimates are included so that the method can be used to complement standardized light microscopy. A scientific literature review, discussion on future perspectives, reference databases and standardization are included. Using eDNA metabarcoding to complement standardized light microscopy advances conventional monitoring and research on phytoplankton communities to assess biodiversity and the state of the marine environment.

Metabarcoding for use in Nordic routine aquatic biomonitoring: a validation study​
  • Language: en
  • Pages: 101

Metabarcoding for use in Nordic routine aquatic biomonitoring: a validation study​

Available online: https://pub.norden.org/temanord2020-538/ Over 75% of all lakes and 40% of all rivers in the EU are found in the Nordic countries. Biomonitoring according to the EU Water Framework Directive (WFD) is adopted by all Nordic countries and forms an integral part of management efforts to preserve and restore the ecological quality of freshwaters and their ecosystem services. Organisms used in WFD biomonitoring are identified by experts; this is time consuming and error prone. Molecular identification methods could be used but have not been tested for monitoring. We compared molecular to expert identification for samples from 297 Nordic lakes and streams. The DNA-based results were highly similar to expert identifications. We suggest that Nordic or European efforts towards implementation and standardization of DNA-based methodology should be undertaken to swiftly ensure the use of this promising tool in future WFD monitoring.

Water Science, Policy and Management
  • Language: en
  • Pages: 421

Water Science, Policy and Management

Provides an in-depth look at science, policy and management in the water sector across the globe Sustainable water management is an increasingly complex challenge and policy priority facing global society. This book examines how governments, municipalities, corporations, and individuals find sustainable water management pathways across competing priorities of water for ecosystems, food, energy, economic growth and human consumption. It looks at the current politics and economics behind the management of our freshwater ecosystems and infrastructure and offers insightful essays that help stimulate more intense and informed debate about the subject and its need for local and international coope...

Tuco-Tucos
  • Language: en
  • Pages: 272

Tuco-Tucos

This book examines the biology of tuco-tucos (Ctenomys) from an evolutionary perspective. Historically, these subterranean rodents have long attracted the attention of scientists due to its remarkable chromosomes variability and rapid diversification. A wealth of knowledge on physiology, ecology, genetics, morphology, paleontology, and taxonomy has been documented in the last 70 years through numerous single publications. In this volume, expert investigators review and frame these essays with the breadth of current understanding. The collection of chapters are presented into the major topics: i) Evolution of Ctenomys, ii) Geographic Patterns, iii) Organismal Biology, and iv) Environmental Relationships. Given its scope, the book will be of interest to both students and researchers and may stimulate further research with this exciting model on a wide range of evolutionary topics.